醫(yī)用生物信息基礎(chǔ)參考_第1頁
醫(yī)用生物信息基礎(chǔ)參考_第2頁
醫(yī)用生物信息基礎(chǔ)參考_第3頁
醫(yī)用生物信息基礎(chǔ)參考_第4頁
醫(yī)用生物信息基礎(chǔ)參考_第5頁
已閱讀5頁,還剩12頁未讀, 繼續(xù)免費閱讀

下載本文檔

版權(quán)說明:本文檔由用戶提供并上傳,收益歸屬內(nèi)容提供方,若內(nèi)容存在侵權(quán),請進行舉報或認領(lǐng)

文檔簡介

1、實驗名稱:肝細胞核因子1a(HNF1a)基因的生物信息學研究姓名:班級:學號:實驗?zāi)康模?.掌握中國期刊網(wǎng)全文數(shù)據(jù)庫中原始全文文獻的搜索及獲得方法.2 .熟悉生物信息學常用網(wǎng)站中的全文或文摘的獲得方法.3 .熟悉網(wǎng)絡(luò)搜索工具,瀏覽器及生物信息中央,掌握醫(yī)學信息獲取途徑.4 .掌握PCR引物的設(shè)計原那么.學習PCR引物設(shè)計軟件使用方法,設(shè)計基因的引物.5 .了解核酸序列數(shù)據(jù)生成和常用分析工具;了解序列比對的根本原理,熟悉常見的Blast程序.6 .了解蛋白質(zhì)分析的根本內(nèi)容,熟悉常見的蛋白質(zhì)分析序列;進行蛋白質(zhì)物理性質(zhì)的預(yù)測和二級結(jié)構(gòu)和折疊預(yù)測的在線操作.實驗方法和流程:一、選擇研究基因選定感興趣

2、的基因:在中國期刊網(wǎng)查詢與藥學有關(guān)的基因,查得依地福新是日前所發(fā)現(xiàn)的第一個通過激活細胞內(nèi)Fas/CD95死亡受體而起作用的抗癌藥物.Fas是近年來研究得最為深入的有關(guān)細胞凋亡的膜外表分子,說明它們在凋亡中的作用機制,對深入了解細胞凋亡的機制有重要的意義.登陸西安交通大學主頁(://)點擊“圖書館點擊“進入圖書館“查找資料欄下,點擊“網(wǎng)絡(luò)數(shù)據(jù)庫導航進入“網(wǎng)絡(luò)數(shù)據(jù)庫,點擊中文數(shù)據(jù)庫中國期刊全文數(shù)據(jù)庫CJFD(中國期刊網(wǎng))-CNKI點擊登錄,進入全文數(shù)據(jù)庫選擇檢索途徑:初級,選擇學科范圍:勾選“醫(yī)藥衛(wèi)生檢索項選擇“關(guān)鍵詞,檢索詞輸入框鍵入“青少年糖尿病基因,時間默認,點擊“檢索匕皿泊

3、比之.|西雙1大事-1fisitZJtSiIlkq產(chǎn)上二尸.JJ-2_F二1二找FW后大甲寺播muflEFFirRUiPJ中飆;口.g.5Rr曲曲電才心布3餐的的G前看的千洋丁2OTM5盟挖年落并冉:1口.京岳翼隰舟石芯丁曲T吉f方即H昕率t邛星傳十鐘我:葉F»樸看意mm內(nèi)口士iPfrtii*母匕-nF三1怎他*1的無由.*二卅iPA'tTei:SMflffi泥H-lj地在5為衣F,a底質(zhì)土t卜f¥丐七丹施忠事聞?wù)?阿必啊H*苒嚼電*西«席衷性f£當專躥事昌立的套息UM破H右日總騎毗郭團軍譯t旁Mm*|1|通*我"iiiGX植金林,小,

4、用小陶幅喻t弓優(yōu)次支后事中國解由際iSJD7.11研能9rtaim州港交為EjDpi厚篁蝦仲幺王釧第加當上01儲刖同5星aasT20D7.M軍際N向(J«聯(lián)適T注JH典!?譯空狗婚TE二l三以翎3晦T1WH至抒K3宜I'l1句hH,/1*寸rwsn5電J既1即-加?NtirEif一上事:口1咖*3»衽L=LMklll:£Mtut二Li衲T!«:“刃nr-nar.opFinarflit3廠口Emon.rnjmwhwdtv里蛆開為超看弋UPreh,3p«anezilaLKDmaFMG3一話中后遇內(nèi)贓應(yīng)性即行近年圣星妾姓冬邯語i亞L&

5、L異網(wǎng)B片在F0圮磷至S亡超曼作用.日/色fDTlFUg*善¥E3崢中騏三伸叫FQ崛ET畸耳日同皿巾代21/融r*OPTWm州32*3巾72/舊看:*文中電加口二樂辦£飛充作一廖逑一£而H#第同】rm目蛇I-電h;|,«即叫黑性謂中T*J-HAME草"喂皆中士二笄地西省甬中.*二性"由即X"他重7*4%喳*7»14Pamru用看M冏腺e中iw:基區(qū)場口廣用律據(jù)m口匚才海目帝利&龍陰府疑弼聃應(yīng)用pcfr噌所“立因計那顯子眄.口必布辭賄m存的西行的點,特果鎏1*5】*i+*fltswocy:'.叫手,踐

6、醇啜點花束時三十鼻皆舊.土詆H芋以1巾綠音題iWtmrMMki立由E如iCtBM蚣崎:由里*0昆尸例由呢妒0£:£,事正寄江擊艮1k刖片嶺看中匕歪一退M.K.后詫清仃口二呼FBfifMIHEM登門能K¥=2用#*F"S%哼-牙麗E用EL?在PUBMED中進行外文文獻的檢索Pub%&d.rU.邕N*MW-tiF-ryUMrdcrfIdorlE玉ristrJie?©1rfesar導HWrf|pu匕MeEMODt3QRSSGsesearefiLimSwftsnceclssarthHe?StcrdiL也隋丁-自二.時:£|UunvHu

7、w曲門?點口也s5itea配Rf-:ei-4yMdd£3Results:1t.20of196口Clinical如口ll詣innofbestprattlCEguideWiesfiorHiegenetitdiagn口乖ofM8Y口ndM00Y3.1 -IncaniM«CambuliVW,CsvalctF,CcnjiLiT.PaderiM,SentineliF,RtuneaS,PnyP.SoroM,PiliaS.LecheS.Co口冶HR:切燈?01nNotf27(11)1331-3.tioI1C111v?口1口口卻95富N.i網(wǎng)的£fag|lWFP隔D;200384P

8、ubNed-inprocemNRB3t£(I?lam號匚t1發(fā)2口n3巴ivciTniter.42林於士,世廣n午id_acei31七iirnn,人川亡中廿北獷"七巾巳飛2 -Hiang.1_"如勺LLRhoad?DB.EJI41tchnDI.2UlLJCt15;150(2259-5/.bpjD2DIUicp17.PWO20ftij(M86PjIHed-rpijcf5sH-凱£(ctaton方ricihlFhFlEEiygmi弓nnj%tinn0iiMulvingbothHMFtAAJiriCY甘刁nilHHF4內(nèi)'MCTWI1印p虧ai習qpi

9、rprirtForlaniG.zuccros.DiRoccoA,dimaoR,scipion?M,MarascoE,rdhsog,MarcnesiiniG,Mantavaniv,L)i曲era©Caa201Cm.片美(11/?金亞9.bpuD201Ajg12.PMID30705777PUbMRd-lrptOCBSS利用生物信息數(shù)據(jù)庫獲取基因序列:翻開NCBI()網(wǎng)站,點擊左邊的下拉條選擇"Gene",輸入“HNF1a顯示如下結(jié)果:4:HHF1AOfficialSymbolHNF1AandName;HNF1homeaboxAHomos

10、apiensOtherAliases:HNF1,UFE1,WODYS.TCFIOtherDesignations:Interferonproductionregulatorfactor(HNF1);albuminproximalfactor;hepaticnuclearfactor1;maturityonsetdiabetesoftheyoung3;tran5匚iptiunfactor1.hepatic;transcriptionfactor1,hepatic;LF-B1.hepaticnuclearfactor(HNF1),albuminproximalfactorChromosome:12

11、;Location:12q24.2Annotation:Chromosome12.NC_000012.10(119000932.119924698)MIM:14241DG«nelD:6927點擊紅色有下劃線的“HNF1a,可獲得此基因的根本信息,如基因的名稱,全名,基因來源物種,基因的其他名稱,如下列圖所示(見下頁):OrdercDNAcicne,Links1;HNF1AHNF1homeoboxAHomosapiensWenI口:15g27SummaryOH'icialSymbolHNF1AprovidedbHGNCOfficialFullNameHNF1homeoboxAp

12、rovidedbyHGM/PrimarysourceHGNC;11621SeerelatedEn-mbl:EN5G(CIQJQ1351QCI:HPR匚:口口3口0;MIM:1424LQGenetypeproteincodingRefSeqstatusVALIDATEDOrganism也m.總總pi§ns_LineageEukaryota;Metazoa;Chordata;Cr&niata;Vertebral;Suteleostomi;Mammalia;Eutheria;fuarchontoglires;Primates;J-/aplorrhini;Cctsrrhini;Hom

13、inid3e;HomoAlsoknowna5HNF1;LFB1;TCF1;MODY3;HNFlftGenomicregions,transcripts,andproduetsGoTor日口匚日s日du日nee日日milsTryour型蝌號®uliwriceViewerNC_00Ml2.11402|kH妁之嶼岫bi43、她L3吟&HBHi1=M即口聊5訴*4B曉船-cin$i|-6tmml儀kd點擊左側(cè)藍色的nm000545.4llinks“Genebank可獲得基因NHF1a的堿基序列,該基因的CDS為“24.1919,該基因的NP號為“NP000536,堿基序列如下列圖見下

14、頁:61121131241?013614Z14B1S4101661T71cgtggccctgtggcggccctcggcrccctagtcgaggggaagacgiacgagccctgagaggcgtgtg3ceggtegataaccatgaagactggegesgeaagctaccaactcctcftt.cca1-rrrr-nrmerf"rtggcagccgagetegagteacctcctggctgetggetgagcgatggggaaggcgorccGacgaagatggteactggctegcagaagcggrgttcacccatcaagaaggggggcctatgagr1n

15、n十BhCEirfLrrgccratggtctgggetgagesggagaaggeectgcccaatggacttcacgccagraaagccgaagtcctacc國acc昌gteccgccgccctgtgcagggcaggcggaggaaccaggcagaagaPf-a-ShFELn!"LletaaactgagaagaggcactCcctgacaaggctgggggacacccatccttgtggagactqu目守c;曰qc白acctgtcccaacacctggtagagggetgatgcttcaagcgaccetagcaascamrrrrrrrTl"ccagctge

16、aggatccaggcagggagtccgactcggggccaaagagetgcctctgcacaacatccrcaacacctcaaccgtccgcaagtgaagagcccciggcccagcaggagageganr!-llllqI-Lnacggagctccctgggtgagctgcggcggcgtccgaggacggagaacctcagaggacccgtcagegggaggaagggcactccagcgagaggacaggtgatgtcccagcagagagaegetaglnerl01rMarlf在NCBI中進行Blast比對復制第二步中所得的堿基序列,從NCBI首頁點擊Blast,可

17、出現(xiàn)下邊圖示的頁面:BasicBLASTChooseaBLASTprogramtorun.mi-cleotideIastSearchanucleotidedatabaseusinganuckotidequeryAfgorjthms:Llastn,megablast,discontiguousmegablastprof電LI門allhlleTXSearchproteindatabaseusingaprol&inqueryAlgorithms:blastp,psi-blast,phi-blastSearchpiotdndatabaseusingatransLiteiinucleoiideq

18、uerySearchiMiislatediiudeothkdatabaseusingapiolehiquerySearchnan&laiediiucleetidedatabaseiiisingatr«insLiteilnucleoiid&query點擊“nucleotide,可出現(xiàn)下列圖所示頁面,在圖示的大框中粘貼堿基序列,按如下所示選擇各工程,然后點擊“blast,可出現(xiàn)比對結(jié)果下第二幅圖和第三幅圖BLASTBastelocsiAiignrMntSearchToolHomeRecentRmuItsSavedStiategiesHelppBIfBLASI/biastn

19、siwc.FormattingResultsF)K2NO»WIO1REd*andRMubtnHSaveSearchSlrateQiesiFwmatEarotiorw»DjwnioadNucleotideSequence(3241letters)QueryIDDfs<riptionMoIpcuIptyppQueryLengthlcl|10779Nonenucleicncid3241DdtcihflseN(im眄ndex/9606/aIIcontig_dnd.rnaDescriptionHumanbuild36.3RNA,rafarwncs?andasssmbli-Pro

20、gram2LASTN22.19421WonOtherreports:>SearchSunrrtryITaxnnnrrYrc,ortrZi,tancctreeofrowlfa:fHumancoomcYic/dGraphicSummaryDistributionof19BlastHitsontheQuerySequenceMousaovertosapih.dofliipclicktoshowslgnmtnisqAlWnnientr|s且sfl昵匚.545.4ILength=3241HomosapiensHNF1hosieoboxA(ENFLA)fmRNAsetAll3譏sl-Gtmd8,uo

21、g(jqDiMmncQtrmc0fmsultuENEID:四£7HHE1Al|IfllElhcmEcboKAEdwdnupi匚g(Ovex100FubMcdld.wk»)Score=55S6bits(321)rEzpect=0.0Identities=221/3241(10D4J.心安封=O;3241費Strfind-Plus/F±usQueryShjnt11二GIGg:CCIGTJGCA&C:GA&CCATGG7TTCTAAA二TGAGCCAGC7i>CAGACUGAGCICClllllllllHlllllllllllllIIIIIIIII

22、IlliHUHHUIIIIIIGTUG'CtTGT'GC也GC:GR3TGG"TTCTAAaUTGAGC:、AGC7GCAGACGGAGTC.C60finQueryCl1G&CGjCCCT03TCfiAGTCAGCG2TGAGCAAAGAGSCACTGATCCAOGOACTOCGT3AGC1111111111111111111111II1111II1111II11111111111111111I1I111I120SfoCt61IGjCGjCCCTGJICGAGLCAl?GG:TGAGCAAAGJLGCACTGATCCAGGCACTGGO!GkGC12UOury

23、121CG4GGCCCTAC7TCCTGjCTBGAm艮&G4C:CCCTfACAA霍G盛又GTCCTGCGGCGGCG11111111111111111111111111111111111111111111II111111111111111ien121C<5(jCG:GCTACCTCCTGjCTCCA3AA;GCZCCUHbWACAA仔WGSRSCCT68.C(5dCG100Query191GTCGA三GGG工G;TG&TSAGCTGZCCAATSGGCTGGGGGAGACTCGGGGCTCCGAGGACG1111111111111111IIII11IIII11IIII

24、11IIII11IIII1111111111111111Z4USbjtit191GTCCA二色白白上仁:T仁榮C亡LAT=母紀T自公至工!L匕ACBTCGCGCTC.CGAGkCCr240Query241A3AC05AC住M3AT9GG3AAACTTCk<依CACCCATCCTCJULA'SAGC!T(3OAGAACCTCA11111111111111111111111111111111111111111111II111111111111111JOOSbjct241AGACGjACSACiJATSGGjAA&ACTTCAC笑CACCC4TCCTCAAAGAGC7GGAGA

25、ACCTCA300Query1GCCCTF&UG工GiCGGCCTACPiGiRCTGTlGirC2rTTTOTAGdGGACCCGT閂白門四、設(shè)計引物選定需要PCR擴增的目的序列,進行引物設(shè)計,本實驗中所選基因HNF1a與MODY3有關(guān),查閱文獻可知該基因2號外顯子上游白內(nèi)含子由G-A置換與MODY3有密切的關(guān)系,故為了深入研究,針對其二號外顯子進行引物設(shè)計.在NCBI中選擇“gene后可查得有關(guān)信息,如下列圖:350.54g/白2n=MHNFl我m/gene_synaiiyro=ftHTJF1p,/geiue_synonyni=rrLFElr,/genc_synaziyiti=PF

26、TCF1p,7gene_3yncnym=f,MOBY3"/inference=Praligimeiit:StlignPl/nujuber=2在google網(wǎng)頁中搜索“primer3",點擊第一條搜索結(jié)果,可出現(xiàn)下列圖所示網(wǎng)頁,在最上面的對話框中粘貼HNF1a的堿基序列,按下列圖所示填寫"targets欄和"ProducesiteRages"欄:geccjijaagag;ajaas2clzc2?cij:j?LffcaaaaQGau二3七叵Pirjrmprimer.QrwcJcftpnmerbugw;?記“也力任由川方由probe團:5聞?pCTU

27、M:lig?bcltiwEPir<rihtprrw£r,紂ysegjitp出口亡hH4宣(5,to31.qoppositertraudl:,11k121191241tggeggeect.七pagncgrjcga.tggcfagccE'ayztcJ=HJlLL:aLceccocci0&xcigfEitmmuxiagcaE.ggtttggyctgsugQBL丁仃*口0.0口0七匕RB00匕丁mwttuzsug1匚zugaguctiLl30430acilREMGUd爐口匚匚匚陽£cct=ea.gEt產(chǎn)a,jn緲qqaar.修inetcdwxg-tgBcgca

28、gr=ticccrigcgctGcgrQ'cjacgtecffngijgngetnr=匕匚百入-IPickIPrmeis|ReseiForm£*加u修Id."|A內(nèi)聯(lián)gideuiiyourogutT-v.-mF-jm艮旦5Ub2TsqijsjpiajjciyI.s-jcr-jun-dLe2bwe.城p中加oue二力皿$51.OiinuikUit盯皿行皿匕聞此sd-.A7CTCCCC1TCAT,皿在EMplzjjwgluuj:0迅山e匕心源CCCC.EHdudtedIEgWQl.8,3Ebrbjdsselect!sn學ffTmer;?inShe7basesotartd

29、ngat401andibe3basesat68Ojmurkihe;3口甄四F但1s加9&(Whte勵thvand=:電g.ATCT<CCCCTCAT.fbrtMdspTtmerstndi?cefitrHC8C居匚3年及snog上XOMDHtim乩:rT©豆Mura5|M】iab曲yB0LlwJUer基工也£皿江以12CCPaMaaKerEl出不爾Hie24COtaxTehipIbte2疝“叩12LtPjiir口忸血業(yè)MLsrimYanaLOP»ckFrmeiisReeeIFnrmi填寫好各欄數(shù)據(jù)后,點擊“PickPrimers",可得如下結(jié)

30、果,下列圖為首選引物:OLIGOlen即看emy_31LEFTPRIMER2742059.945S.004.002.00ccacctcaaagagc七ggagRIGHTPRIMER6022060.2655.DO4.00C.00ct;catcacctg-trgggctcttSEQUENCESIZE:3243INCLUDEDREG工ONSIZE;3243PRODUCTSI2E:929,PAIRANYCOMPL:tJ.OO.PAIR31COUPLi3.ODTAP.GETS(Start,len):3£0f2001CQCffgccctytQgcaffccffaffccatffutttctaaa

31、ctsaccayctjcaffacrsgacctcc61tggcggccctgctcgatcagggccgagcaaagaggcactgatccggcactgggrgage121cgggTgccctacctcctggctggagaaggccccctggacaaggrgggagtcctcjcggcggcg181gtcgagggagctggccgagcc.geccaat.gggctgggagacrcgggttcicgaggacg241agacggacgacgatggaagactt-cacgccacccaccrctcaaagagct-agagaacctca>»>»&#

32、187;»>»»>»»301getc寸總曰口ag)gcgcccaocagaaaecgtggtgacracectter.qca白白白目目acecgt361ggeggtggcgaagat燈目匚caatcctacc:tgcagcageacaaca'CcacaGagcgggag(g+t士方+%由F才+*F古青*興*tF前卡雷需至十*+*K*啟*fF*1f*需十才*才土*需宣*421tggteataccactegect.caaceagteceacccgECCCaaeaccrcQaeaaggcaccc重*言高*卡*去意*畬£卡

33、古力去上全土舍高*弋*味金*弋*卡金龍肅黃去擊言去塞左W*京大F#前云前病青土*木塞雷士*卜圖為備選引物KEYStinorderciprecedence):target.»»»leltprtwer<<<<<<rightprimerADDITIONALOLIGOS更p"t_甄m.any3,'1LEFTPR工HER2742059、9455-004皿2.00ccatcctcaaagagctggagRIGHTPRIMER60E2059.7055.004,002.00tggtagetcateacretgtggPRODUC

34、TSIZE:335.PAIRANYCOHPL15.on,PAIR31COMPL:2.002LEFTPRIMER27420S9.9455.004.002.00ccatcctrcaaagagctrggagRIGHTPRIMER6682060.6255.004.000,00gaacaggatetgetgggatgPRODUCTSIZE:395rPAIRANTCOMPL:5.OC,PAIR31COHPL:2皿3LEFTPRIMER2742059.9455-004+002.00ccatcccaaaga9ctggagRIGHTPRIMER59620M6650-003,001.00acctgtgggctct

35、tceatcaPRODUCTSIZE:323,PAIRANTCOMPL!6.00,PAIR31COMPL:1.004LEFTPRIMER2742059.9455.004.002.00ccatCctcaaagagctggagRIGHTPRIMER5972060.6655.004.00cacct.gtgggctcttcaatcPRODUCTSIZE:324fPAIRANYCOHPL:6,皿PAIR31CQMPL;2.00Statisticscontooininnotmtinhighhighhighsidmanytar£JXCltoadGCtoocooany31polyenderedNsg

36、etregGC%clamplowhighcornplcomplXstabokLeft.29320D094n5i249055040207Right22245110569014901731903504362317PairStats:considE匚曰(13118,unacceptableproduct-size3口95,highendcomplok22prixnerSrelease1.1,0五、蛋白質(zhì)分析在第二步所得頁面中點擊NP000536,可得基因HNF1a所編碼的蛋白質(zhì)序列,如下列圖所ORIGIN16112L1612130136142148LSL6DL/irtvsklslqtpnglq&am

37、p;trgssy.lqqtiilipqciqrgvspsqahssplpppallsteaklv31gptftrtgqshvtqspfniqvfissdteassdssngqshlsllaallesedatdddgedrewcittglngdeIptkltgraqglganlvtalspsRvhgvsaaggplppvostIviglasatmaeg1qspha亨gLhtp國nIpsnhsvietLslcealigLftpptlkeleqshJsqhliikiEiirfKwcjpasevrvynwfan3etstItalhslerqQqsvpvinalyslikpeva£isvqni

38、asssgegpyliagnlepeaaahqcitpmktqkr&cjqiL工qayerrtkeeairhktevpsssggpqtspglnqqp3ftl0SSltlqegyt-htgllpcdpasiqtilqpegpldkgesckawetllqealytwyvrkciqknpmKuu匚匕l(fā)amdtysgppIvtvstplhqqnliinaslpgpvqfsqplhptmlitdttnl京htgggrgu1尊匕LdpurvatattvfcrefvaqqftliatlveecucaepgpgpgpaJpvsptgl&psbvrutigpgepasyqgplmppvsal

39、asltprki35S3ivlyqs利用ProtParam(expasy.ch/tools/protparam.html)查詢蛋白質(zhì)根本性質(zhì)如下列圖:Molecularweight:67386.4Theoreticalpl:5.82Aminoacidcomposition:CSVformatAla(A)487.6%Arg(R)203.2%Asn(N)182.9%Asp(D)142.2%Cys(C)30.5%Gin(Q)507.9%Glu(E)436.8%Gly(G)487.6%His(H)223.5%He(I)142.2%Leu(L)7111.3%Lys(K)223.5%Met(M)121.9

40、%Phe(F)111.7%Pro(P)609.5%Ser(S)7311.6%Thr(T)518.1%Trp(W)40.6%Tyr(Y)121.9%Vai(V)355.5%Pyl(0)00.0%Sec(U)00.0%(B)00.0%00.0%(X)00.0%Totalnumboroinogatlvolyonarqodroslduos(Asp4G±u):57Totalnumberofpositivelychargedresidues(Arg十Lys):42Atoniccoitposition:CarbonC2945HydrogenH4b85UrtrogenU829Oxygen0950Su

41、lfursIS上OFJlula:.29"看685"8291950,15Totalniunberofatcwis:9424Extinctioncoefficients:Extinctioncoefficientsareinunitsofcm-1/at280nm£xt.coofficiontAbs0.(W1g/1)400050.594/aoovmingALLCysresiduesappearmeasuredinv/ater.shalfcystinesEirt.coofticiontAbs0.1%31g/1)halfcystines398800.592/assuming

42、WOCysresiduesappearEsl.ihcilf-lifejTheM-terminalof二h.ocq'jcncoccnsi4credisM(Het).Thhalf-llf*ij:Lnvitg).30huu工守A.itinHliaQr4LiaiiLoeytar>2Dhours(yojcrtfinvavo)->IDJiours(Eschirichi*colinvivo).lustabilityiudex:Theinetabilityindex:1工JiscoxputdcoN?59.32uhinclassifiestheproteinanunstable.Alipha

43、ticIndex:JS.23sandEcmg電ofhydropathiclty(qeavy):-0,452禾ij用TMPred(://cgi-bin/TMPRED_form_parser)預(yù)測蛋白質(zhì)跨膜序列和方向,結(jié)果如下列圖:LPossibletransmembranehelicesThesequencepositioiisinbracittsdenonunate仕itcoreregion>riy;.017:彳aboirOCarecotiRidfitfid百即ifkart£rowtoacoreeenter403(4031423(423|7S3413i

44、22(IZ8415(41L|848133SZL(SZ1515(S13|29533Outsideginaidehelicea:2foundCrowtoscorecenter389(359|363(38川390379130(q39(S33I606130Insi.deldo'utoideheLloco;3found2.)T:ibleufcorrespondencesHere而showilywhichcfthemade->ci.tsi'ieheJeescorr«sp-3ndXwlxchth=cUride->inrklehelicesTftictEshevinbra

45、cketsarecn?idtredininn:antA"sj'mLfrJinlicafssapreferenceofHus©tit抗aEotuA,LH-"-symbDiidratesastrongprEferencEofthisorientation.inside->outside|403-423打753422-44s(2S|648521-545(251294-+4-+I(IIIIoutside->inside359-389(21|390i420-439(201£883JmcnklsliirIranKmenibranelopoloIj

46、lcecsriggTEb.viisarepme-REpscijJatvr出dzhjiuldbrik=dwithexireiiiecaution>in_etheyar-basrdoath=口口tliaia_iramsmeotiranehrjcr£havebiEiifouiiii.M.rtK拗iBiseziieCccrrxinifTiceTiblesbowiafc-oi-e討theptt-ictimiplol在雄廳atjreadshouldbeusedforUeto里口】ugy郭鄉(xiāng)穹mlentolutAjj".rtHb®玲El*enicseir|?i5i#onl

47、ycigmificwtumeE->sllQjjclpifcfeuedmdels:NreriftinusinsideIrxanairemrtr.»ietie1ices-rtotalfltccs:753#tcleogth.jiceizeorlentatieci1403311L|7531-G->aLteczk.3.t,iv-rrcdel1stratigt*BLasjrEJurt:aneneJiceSa.total白亡0e史:&3Urrsftifceleth.steereariencatin14£口蟲坦|20>)|EB目0-1THpr*daulpuk也?u

48、nknnkMi1CW-32C0-4MA-8皿-tmu.利用SignslP3.0(:cbs.dtu.dk/cgi-bin/webface?jobid=signalp,4969A19001B46C57&opt=wait)預(yù)測信號肽位置和結(jié)構(gòu),結(jié)果如下列圖:signaJLPINNresult:Sign巴PINNprodic-tion(俗ukne-uorks?“Sequencevsfoqumncm*MeasureixCmaxYmsxSmeanSDposition2323131221122ImngchH70ValuecucoHIf2772787083993390000sign-lp工MMprdioeon?,uksiutn;hl,8ionpjob3VSKLSQLQTELLAALLESGLSKEALIQX>LGEPGPYLLAGEGPLDKGESCGGGRGEL1>ELPNGLGEa曰曰3n曰huePrediction:Non-secreDoryproteinSigna

溫馨提示

  • 1. 本站所有資源如無特殊說明,都需要本地電腦安裝OFFICE2007和PDF閱讀器。圖紙軟件為CAD,CAXA,PROE,UG,SolidWorks等.壓縮文件請下載最新的WinRAR軟件解壓。
  • 2. 本站的文檔不包含任何第三方提供的附件圖紙等,如果需要附件,請聯(lián)系上傳者。文件的所有權(quán)益歸上傳用戶所有。
  • 3. 本站RAR壓縮包中若帶圖紙,網(wǎng)頁內(nèi)容里面會有圖紙預(yù)覽,若沒有圖紙預(yù)覽就沒有圖紙。
  • 4. 未經(jīng)權(quán)益所有人同意不得將文件中的內(nèi)容挪作商業(yè)或盈利用途。
  • 5. 人人文庫網(wǎng)僅提供信息存儲空間,僅對用戶上傳內(nèi)容的表現(xiàn)方式做保護處理,對用戶上傳分享的文檔內(nèi)容本身不做任何修改或編輯,并不能對任何下載內(nèi)容負責。
  • 6. 下載文件中如有侵權(quán)或不適當內(nèi)容,請與我們聯(lián)系,我們立即糾正。
  • 7. 本站不保證下載資源的準確性、安全性和完整性, 同時也不承擔用戶因使用這些下載資源對自己和他人造成任何形式的傷害或損失。

評論

0/150

提交評論